Michael Ford wakes up to find that the Leviathan regurgitated him into an old crashed Progenitor spaceship named Atlantis that rests deep in the ocean. Working his way through the ship, he acquires the Destroyer Armor, which is much stronger than the Trust Armor he had been wearing.
Ford then finds Andromeda held in stasis. Prometheus says they will need her help in defeating John Adams, so Ford awakens her with the All-Seeing Eye. Andromeda activates the conduit that will allow Ford to jump to Adams' last known location, which happens to be Washington, D.C.
|The Conduit missions|
|Threshold • Contagion • Enemy • Trust • Gridlock • Invasion • Homeland • Checkmate • Closure|
|Conduit 2 missions|
| Trust Platform • Leviathan • Atlantis • Washington, D.C. • Atlantis • China • Li|
• Siberia Crash • Siberia • Siberia Escape • Lost City • Adams • Agartha
Optional missions: Crash Site • Precipice • Serenity